Poretsky | Publications
6388
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Publications

  • I. Kauser, M. Ciesielski, and R. S. Poretsky, “Ultraviolet disinfection impacts the microbial community composition and function of treated wastewater effluent and the receiving urban river,” PeerJ Preprints 2019.
    [Bibtex]
    @techreport{kauser2019ultraviolet,
    title={Ultraviolet disinfection impacts the microbial community composition and function of treated wastewater effluent and the receiving urban river},
    author={Kauser, Imrose and Ciesielski, Mark and Poretsky, Rachel S},
    year={2019},
    institution={PeerJ Preprints}
    }
  • M. L. Pierce, J. S. Lee, E. Dodd, and R. S. Poretsky, “Algae and clay water additives differentially impact survival and microbial community structure in sablefish (anoplopoma fimbria) rearing tanks,” Frontiers in marine science, vol. 6, p. 203, 2019.
    [Bibtex]
    @article{pierce2019algae,
    title={Algae and Clay Water Additives Differentially Impact Survival and Microbial Community Structure in Sablefish (Anoplopoma fimbria) Rearing Tanks},
    author={Pierce, Melissa L and Lee, Jonathan SF and Dodd, Emily and Poretsky, Rachel Susan},
    journal={Frontiers in Marine Science},
    volume={6},
    pages={203},
    year={2019},
    publisher={Frontiers}
    }
  • M. Petrovich, B. Chu, D. Wright, J. Griffin, M. Elfeki, B. T. Murphy, R. Poretsky, and G. Wells, “Antibiotic resistance genes show enhanced mobilization through suspended growth and biofilm-based wastewater treatment processes,” Fems microbiology ecology, vol. 94, iss. 5, p. fiy041, 2018.
    [Bibtex]
    @article{petrovich2018antibiotic,
    title={Antibiotic resistance genes show enhanced mobilization through suspended growth and biofilm-based wastewater treatment processes},
    author={Petrovich, Morgan and Chu, Binh and Wright, Dorothy and Griffin, Jim and Elfeki, Maryam and Murphy, Brian T and Poretsky, Rachel and Wells, George},
    journal={FEMS microbiology ecology},
    volume={94},
    number={5},
    pages={fiy041},
    year={2018},
    publisher={Oxford University Press}
    }
  • T. Berger-Wolf, B. Igic, C. Taylor, R. Sloan, and R. Poretsky, “A biology-themed introductory cs course at a large, diverse public university,” in Proceedings of the 49th acm technical symposium on computer science education, 2018, p. 233–238.
    [Bibtex]
    @inproceedings{berger2018biology,
    title={A Biology-themed Introductory CS Course at a Large, Diverse Public University},
    author={Berger-Wolf, Tanya and Igic, Boris and Taylor, Cynthia and Sloan, Robert and Poretsky, Rachel},
    booktitle={Proceedings of the 49th ACM Technical Symposium on Computer Science Education},
    pages={233--238},
    year={2018},
    organization={ACM}
    }
  • A. Chaudhary, I. Kauser, A. Ray, and R. Poretsky, “Taxon-driven functional shifts associated with storm flow in an urban stream microbial community,” Msphere, vol. 3, iss. 4, p. e00194–18, 2018.
    [Bibtex]
    @article{chaudhary2018taxon,
    title={Taxon-Driven Functional Shifts Associated with Storm Flow in an Urban Stream Microbial Community},
    author={Chaudhary, Adit and Kauser, Imrose and Ray, Anirban and Poretsky, Rachel},
    journal={mSphere},
    volume={3},
    number={4},
    pages={e00194--18},
    year={2018},
    publisher={Am Soc Microbiol}
    }
  • B. T. Chu, M. L. Petrovich, A. Chaudhary, D. Wright, B. Murphy, G. Wells, and R. Poretsky, “Metagenomics reveals the impact of wastewater treatment plants on the dispersal of microorganisms and genes in aquatic sediments,” Appl. environ. microbiol., vol. 84, iss. 5, p. e02168–17, 2018.
    [Bibtex]
    @article{chu2018metagenomics,
    title={Metagenomics reveals the impact of wastewater treatment plants on the dispersal of microorganisms and genes in aquatic sediments},
    author={Chu, Binh TT and Petrovich, Morgan L and Chaudhary, Adit and Wright, Dorothy and Murphy, Brian and Wells, George and Poretsky, Rachel},
    journal={Appl. Environ. Microbiol.},
    volume={84},
    number={5},
    pages={e02168--17},
    year={2018},
    publisher={Am Soc Microbiol}
    }
  • Y. Wang, J. K. Hatt, D. Tsementzi, L. M. Rodriguez-R, C. A. Ruiz-Pérez, M. R. Weigand, H. Kizer, G. Maresca, R. Krishnan, R. Poretsky, and others, “Quantifying the importance of the rare biosphere for microbial community response to organic pollutants in a freshwater ecosystem,” Appl. environ. microbiol., vol. 83, iss. 8, p. e03321–16, 2017.
    [Bibtex]
    @article{wang2017quantifying,
    title={Quantifying the importance of the rare biosphere for microbial community response to organic pollutants in a freshwater ecosystem},
    author={Wang, Yuanqi and Hatt, Janet K and Tsementzi, Despina and Rodriguez-R, Luis M and Ruiz-P{\'e}rez, Carlos A and Weigand, Michael R and Kizer, Heidi and Maresca, Gina and Krishnan, Raj and Poretsky, Rachel and others},
    journal={Appl. Environ. Microbiol.},
    volume={83},
    number={8},
    pages={e03321--16},
    year={2017},
    publisher={Am Soc Microbiol}
    }
  • M. Ricketts, R. Poretsky, J. Welker, and M. Gonzalez-Meler, “Soil bacterial community and functional shifts in response to thermal insulation in moist acidic tundra of northern alaska,” Soil discussion, vol. 1, 2016.
    [Bibtex]
    @article{ricketts2016soil,
    title={Soil bacterial community and functional shifts in response to thermal insulation in moist acidic tundra of Northern Alaska},
    author={Ricketts, MP and Poretsky, RS and Welker, JM and Gonzalez-Meler, MA},
    journal={Soil Discussion},
    volume={1},
    year={2016}
    }
  • M. P. Ricketts, R. S. Poretsky, J. M. Welker, and M. A. Gonzalez-Meler, “Soil bacterial community and functional shifts in response to altered snowpack in moist acidic tundra of northern alaska,” Soil, vol. 2, iss. 3, p. 459–474, 2016.
    [Bibtex]
    @article{ricketts2016soil,
    title={Soil bacterial community and functional shifts in response to altered snowpack in moist acidic tundra of northern Alaska},
    author={Ricketts, Michael P and Poretsky, Rachel S and Welker, Jeffrey M and Gonzalez-Meler, Miquel A},
    journal={Soil},
    volume={2},
    number={3},
    pages={459--474},
    year={2016},
    publisher={Copernicus GmbH}
    }
  • J. S. Lee, R. S. Poretsky, M. A. Cook, J. J. Reyes-Tomassini, B. A. Berejikian, and F. W. Goetz, “Dimethylsulfoniopropionate (dmsp) increases survival of larval sablefish, anoplopoma fimbria,” Journal of chemical ecology, vol. 42, iss. 6, p. 533–536, 2016.
    [Bibtex]
    @article{lee2016dimethylsulfoniopropionate,
    title={Dimethylsulfoniopropionate (DMSP) increases survival of larval sablefish, Anoplopoma fimbria},
    author={Lee, Jonathan SF and Poretsky, Rachel S and Cook, Matthew A and Reyes-Tomassini, Jose J and Berejikian, Barry A and Goetz, Frederick W},
    journal={Journal of chemical ecology},
    volume={42},
    number={6},
    pages={533--536},
    year={2016},
    publisher={Springer}
    }
  • M. Vila-Costa, J. M. Rinta-Kanto, R. S. Poretsky, S. Sun, R. P. Kiene, and M. A. Moran, “Microbial controls on dmsp degradation and dms formation in the sargasso sea,” Biogeochemistry, vol. 120, iss. 1-3, p. 295–305, 2014.
    [Bibtex]
    @article{vila2014microbial,
    title={Microbial controls on DMSP degradation and DMS formation in the Sargasso Sea},
    author={Vila-Costa, Maria and Rinta-Kanto, Johanna M and Poretsky, Rachel S and Sun, Shulei and Kiene, Ronald P and Moran, Mary Ann},
    journal={Biogeochemistry},
    volume={120},
    number={1-3},
    pages={295--305},
    year={2014},
    publisher={Springer}
    }
  • D. Tsementzi, R. Poretsky, L. M. Rodriguez-R, C. Luo, and K. T. Konstantinidis, “Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities,” Environmental microbiology reports, vol. 6, iss. 6, p. 640–655, 2014.
    [Bibtex]
    @article{tsementzi2014evaluation,
    title={Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities},
    author={Tsementzi, Despina and Poretsky, Rachel and Rodriguez-R, Luis M and Luo, Chengwei and Konstantinidis, Konstantinos T},
    journal={Environmental microbiology reports},
    volume={6},
    number={6},
    pages={640--655},
    year={2014},
    publisher={Wiley Online Library}
    }
  • R. Poretsky, L. M. Rodriguez-R, C. Luo, D. Tsementzi, and K. T. Konstantinidis, “Strengths and limitations of 16s rrna gene amplicon sequencing in revealing temporal microbial community dynamics,” Plos one, vol. 9, iss. 4, p. e93827, 2014.
    [Bibtex]
    @article{poretsky2014strengths,
    title={Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics},
    author={Poretsky, Rachel and Rodriguez-R, Luis M and Luo, Chengwei and Tsementzi, Despina and Konstantinidis, Konstantinos T},
    journal={PloS one},
    volume={9},
    number={4},
    pages={e93827},
    year={2014},
    publisher={Public Library of Science}
    }
  • S. Oh, A. Caro-Quintero, D. Tsementzi, N. DeLeon-Rodriguez, C. Luo, R. Poretsky, and K. T. Konstantinidis, “Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of lake lanier, a temperate freshwater ecosystem,” Appl. environ. microbiol., vol. 77, iss. 17, p. 6000–6011, 2011.
    [Bibtex]
    @article{oh2011metagenomic,
    title={Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem},
    author={Oh, Seungdae and Caro-Quintero, Alejandro and Tsementzi, Despina and DeLeon-Rodriguez, Natasha and Luo, Chengwei and Poretsky, Rachel and Konstantinidis, Konstantinos T},
    journal={Appl. Environ. Microbiol.},
    volume={77},
    number={17},
    pages={6000--6011},
    year={2011},
    publisher={Am Soc Microbiol}
    }
  • M. Vila-Costa, J. M. Rinta-Kanto, S. Sun, S. Sharma, R. Poretsky, and M. A. Moran, “Transcriptomic analysis of a marine bacterial community enriched with dimethylsulfoniopropionate,” The isme journal, vol. 4, iss. 11, p. 1410, 2010.
    [Bibtex]
    @article{vila2010transcriptomic,
    title={Transcriptomic analysis of a marine bacterial community enriched with dimethylsulfoniopropionate},
    author={Vila-Costa, Maria and Rinta-Kanto, Johanna M and Sun, Shulei and Sharma, Shalabh and Poretsky, Rachel and Moran, Mary Ann},
    journal={The ISME journal},
    volume={4},
    number={11},
    pages={1410},
    year={2010},
    publisher={Nature Publishing Group}
    }
  • I. Hewson, R. S. Poretsky, J. H. Tripp, J. P. Montoya, and J. P. Zehr, “Spatial patterns and light-driven variation of microbial population gene expression in surface waters of the oligotrophic open ocean,” Environmental microbiology, vol. 12, iss. 7, p. 1940–1956, 2010.
    [Bibtex]
    @article{hewson2010spatial,
    title={Spatial patterns and light-driven variation of microbial population gene expression in surface waters of the oligotrophic open ocean},
    author={Hewson, Ian and Poretsky, Rachel S and Tripp, H James and Montoya, Joseph P and Zehr, Jonathan P},
    journal={Environmental microbiology},
    volume={12},
    number={7},
    pages={1940--1956},
    year={2010},
    publisher={Wiley Online Library}
    }
  • V. Orphan, A. Dekas, R. Poretsky, and J. Amend, “Methane-oxidizing archaea fix nitrogen in cooperation with sulfate-reducing bacteria in deep-sea methane seeps,” in Astrobiology science conference 2010: evolution and life: surviving catastrophes and extremes on earth and beyond, 2010, p. 5204.
    [Bibtex]
    @inproceedings{orphan2010methane,
    title={Methane-oxidizing Archaea Fix Nitrogen in Cooperation with Sulfate-reducing Bacteria in Deep-Sea Methane Seeps},
    author={Orphan, VJ and Dekas, AE and Poretsky, R and Amend, J},
    booktitle={Astrobiology Science Conference 2010: Evolution and Life: Surviving Catastrophes and Extremes on Earth and Beyond},
    volume={1538},
    pages={5204},
    year={2010}
    }
  • R. Poretsky, S. Sun, X. Mou, and M. Moran, “Insights into dissolved organic carbon transformations through comparative metatranscriptomics of coastal marine bacterioplankton,” in Proceedings from the 2010 agu ocean sciences meeting, 2010.
    [Bibtex]
    @inproceedings{poretsky2010insights,
    title={Insights into dissolved organic carbon transformations through comparative metatranscriptomics of coastal marine bacterioplankton},
    author={Poretsky, R and Sun, S and Mou, X and Moran, M},
    booktitle={Proceedings from the 2010 AGU Ocean Sciences Meeting},
    year={2010},
    organization={American Geophysical Union, 2000 Florida Ave., N. W. Washington DC 20009 USA,}
    }
  • R. S. Poretsky, S. Sun, X. Mou, and M. A. Moran, “Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon,” Environmental microbiology, vol. 12, iss. 3, p. 616–627, 2010.
    [Bibtex]
    @article{poretsky2010transporter,
    title={Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon},
    author={Poretsky, Rachel S and Sun, Shulei and Mou, Xiaozhen and Moran, Mary Ann},
    journal={Environmental Microbiology},
    volume={12},
    number={3},
    pages={616--627},
    year={2010},
    publisher={Wiley Online Library}
    }
  • R. Poretsky, S. Gifford, J. Rinta-Kanto, M. Vila-Costa, and M. Moran, “Analyzing gene expression from marine microbial communities using environmental,” , 2009.
    [Bibtex]
    @article{poretsky2009analyzing,
    title={Analyzing Gene Expression from Marine Microbial Communities using Environmental},
    author={Poretsky, RS and Gifford, S and Rinta-Kanto, J and Vila-Costa, M and Moran, MA},
    year={2009}
    }
  • I. Hewson, R. S. Poretsky, R. A. Beinart, A. E. White, T. Shi, S. R. Bench, P. H. Moisander, R. W. Paerl, J. H. Tripp, J. P. Montoya, and others, “In situ transcriptomic analysis of the globally important keystone n 2-fixing taxon crocosphaera watsonii,” The isme journal, vol. 3, iss. 5, p. 618, 2009.
    [Bibtex]
    @article{hewson2009situ,
    title={In situ transcriptomic analysis of the globally important keystone N 2-fixing taxon Crocosphaera watsonii},
    author={Hewson, Ian and Poretsky, Rachel S and Beinart, Roxanne A and White, Angelicque E and Shi, Tuo and Bench, Shellie R and Moisander, Pia H and Paerl, Ryan W and Tripp, H James and Montoya, Joseph P and others},
    journal={The ISME journal},
    volume={3},
    number={5},
    pages={618},
    year={2009},
    publisher={Nature Publishing Group}
    }
  • A. E. Dekas, R. S. Poretsky, and V. J. Orphan, “Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortia,” Science, vol. 326, iss. 5951, p. 422–426, 2009.
    [Bibtex]
    @article{dekas2009deep,
    title={Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortia},
    author={Dekas, Anne E and Poretsky, Rachel S and Orphan, Victoria J},
    journal={Science},
    volume={326},
    number={5951},
    pages={422--426},
    year={2009},
    publisher={American Association for the Advancement of Science}
    }
  • I. Hewson, R. S. Poretsky, S. T. Dyhrman, B. Zielinski, A. E. White, J. H. Tripp, J. P. Montoya, and J. P. Zehr, “Microbial community gene expression within colonies of the diazotroph, trichodesmium, from the southwest pacific ocean,” The isme journal, vol. 3, iss. 11, p. 1286, 2009.
    [Bibtex]
    @article{hewson2009microbial,
    title={Microbial community gene expression within colonies of the diazotroph, Trichodesmium, from the Southwest Pacific Ocean},
    author={Hewson, Ian and Poretsky, Rachel S and Dyhrman, Sonya T and Zielinski, Brian and White, Angelicque E and Tripp, H James and Montoya, Joseph P and Zehr, Jonathan P},
    journal={The ISME journal},
    volume={3},
    number={11},
    pages={1286},
    year={2009},
    publisher={Nature Publishing Group}
    }
  • R. S. Poretsky, S. Gifford, J. Rinta-Kanto, M. Vila-Costa, and M. A. Moran, “Analyzing gene expression from marine microbial communities using environmental transcriptomics,” Jove (journal of visualized experiments), iss. 24, p. e1086, 2009.
    [Bibtex]
    @article{poretsky2009analyzing,
    title={Analyzing gene expression from marine microbial communities using environmental transcriptomics},
    author={Poretsky, Rachel S and Gifford, Scott and Rinta-Kanto, Johanna and Vila-Costa, Maria and Moran, Mary Ann},
    journal={JoVE (Journal of Visualized Experiments)},
    number={24},
    pages={e1086},
    year={2009}
    }
  • R. S. Poretsky, I. Hewson, S. Sun, A. E. Allen, J. P. Zehr, and M. A. Moran, “Comparative day/night metatranscriptomic analysis of microbial communities in the north pacific subtropical gyre,” Environmental microbiology, vol. 11, iss. 6, p. 1358–1375, 2009.
    [Bibtex]
    @article{poretsky2009comparative,
    title={Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre},
    author={Poretsky, Rachel S and Hewson, Ian and Sun, Shulei and Allen, Andrew E and Zehr, Jonathan P and Moran, Mary Ann},
    journal={Environmental microbiology},
    volume={11},
    number={6},
    pages={1358--1375},
    year={2009},
    publisher={Wiley Online Library}
    }
  • R. S. Poretsky, “Transcriptomic and metatranscriptomic analyses of marine microbial communities,” PhD Thesis, 2008.
    [Bibtex]
    @phdthesis{poretsky2008transcriptomic,
    title={Transcriptomic and metatranscriptomic analyses of marine microbial communities},
    author={Poretsky, Rachel Susan},
    year={2008},
    school={uga}
    }
  • R. S. Poretsky, N. Bano, A. Buchan, G. LeCleir, J. Kleikemper, M. Pickering, W. M. Pate, M. A. Moran, and J. T. Hollibaugh, “Analysis of microbial gene transcripts in environmental samples,” Appl. environ. microbiol., vol. 71, iss. 7, p. 4121–4126, 2005.
    [Bibtex]
    @article{poretsky2005analysis,
    title={Analysis of microbial gene transcripts in environmental samples},
    author={Poretsky, Rachel S and Bano, Nasreen and Buchan, Alison and LeCleir, Gary and Kleikemper, Jutta and Pickering, Maria and Pate, Whitney M and Moran, Mary Ann and Hollibaugh, James T},
    journal={Appl. Environ. Microbiol.},
    volume={71},
    number={7},
    pages={4121--4126},
    year={2005},
    publisher={Am Soc Microbiol}
    }
  • R. S. Poretsky, “Finding a niche: the habits and habitats of purple non-sulfur bacteria,” Microbial diversity athens, ga, vol. 30602, 2003.
    [Bibtex]
    @article{poretsky2003finding,
    title={Finding a niche: The habits and habitats of purple non-sulfur bacteria},
    author={Poretsky, Rachel S},
    journal={Microbial Diversity Athens, GA},
    volume={30602},
    year={2003}
    }
  • R. S. Poretsky, “University of illinois at chicago,” United states.
    [Bibtex]
    @article{poretskyuniversity,
    title={University of Illinois at Chicago},
    author={Poretsky, Rachel Susan},
    journal={United States}
    }
  • R. S. Poretsky, N. Bano, A. Buchan, J. T. Hollibaugh, and M. A. Moran, “Section 8 update-environmental transcriptomics: a method to access expressed genes in complex microbial communities,” in Molecular microbial ecology manual, .
    [Bibtex]
    @incollection{poretskysection,
    title={Section 8 Update-Environmental transcriptomics: a method to access expressed genes in complex microbial communities},
    author={Poretsky, Rachel S and Bano, Nasreen and Buchan, Alison and Hollibaugh, James T and Moran, Mary Ann},
    booktitle={Molecular Microbial Ecology Manual}
    }
  • M. P. Ricketts, R. S. Poretsky, J. M. Welker, and M. A. Gonzalez-Meler, “Arctic bacterial functional shifts associated with som decomposition in response to increased winter snow accumulation.”
    [Bibtex]
    @article{rickettsarctic,
    title={Arctic bacterial functional shifts associated with SOM decomposition in response to increased winter snow accumulation},
    author={Ricketts, Michael P and Poretsky, Rachel S and Welker, Jeffrey M and Gonzalez-Meler, Miquel A}
    }